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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
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Posts
Future Blog Post
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Blog Post number 4
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
portfolio
Portfolio item number 1
Short description of portfolio item number 1
Portfolio item number 2
Short description of portfolio item number 2
publications
cancerAlign: Stratifying tumors by unsupervised alignment across cancer types
Published in Preprint, 2020
Bowen Gao, Yunan Luo, Jianzhu Ma, Sheng Wang
Download here
Coarse-to-Fine: a Hierarchical Diffusion Model for Molecule Generation in 3D
Published in ICML, 2023
Bo Qiang, Yuxuan Song, Minkai Xu, Jingjing Gong, Bowen Gao, Hao Zhou, Weiying Ma, Yanyan Lan
Download here
DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
Published in NeurIPS, 2023
Bowen Gao</strong>, Bo Qiang, Haichuan Tan, Yinjun Jia, Minsi Ren, Minsi Lu, Jingjing Liu, Wei-Ying Ma, Yanyan Lan
Download here
Delta Score: Improving the Binding Assessment of Structure-Based Drug Design Methods
Published in NeurIPS GenBio workshop, 2023
Minsi Ren, Bowen Gao, Bo Qiang, Yanyan Lan
Download here
Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment
Published in ICLR, 2024
Bowen Gao</strong>, Yinjun Jia, Yuanle Mo, Yuyan Ni, Weiying Ma, Zhiming Ma, Yanyan Lan
Download here
Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion
Published in ICML, 2024
Bowen Gao</strong>, Minsi Ren, Yuyan Ni, Yanwen Huang, Bo Qiang, Zhi-Ming Ma, Wei-Ying Ma, Yanyan Lan
Download here
Multi-level Interaction Modeling for Protein Mutational Effect Prediction
Published in Under Review, 2024
Yuanle Mo, Xin Hong, Bowen Gao, Yinjun Jia, Yanyan Lan
Download here
SIU: A Million-Scale Structural Small Molecule-Protein Interaction Dataset for Unbiased Bioactivity Prediction
Published in Under Review, 2024
Yanwen Huang*, Bowen Gao*, Yinjun Jia, Hongbo Ma, Wei-Ying Ma, Ya-Qin Zhang, Yanyan Lan
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Redefining the Task of Bioactivity Prediction
Published in ICLR 2025, 2025
Yanwen Huang*, Bowen Gao*, Yinjun Jia, Hongbo Ma, Wei-Ying Ma, Ya-Qin Zhang, Yanyan Lan
Recommended citation: Yanwen Huang*, Bowen Gao*, Yinjun Jia, Hongbo Ma, Wei-Ying Ma, Ya-Qin Zhang, Yanyan Lan. "Redefining the Task of Bioactivity Prediction." International Conference on Learning Representations (ICLR), 2025. https://openreview.net/pdf?id=S8gbnkCgxZ
Reframing Structure-Based Drug Design Model Evaluation via Metrics Correlated to Practical Needs
Published in ICLR 2025, 2025
Bowen Gao</strong>, Haichuan Tan, Yanwen Huang, Minsi Ren, Xiao Huang, Wei-Ying Ma, Ya-Qin Zhang, Yanyan Lan
Recommended citation: Bowen Gao*, Haichuan Tan*, Yanwen Huang, Minsi Ren, Xiao Huang, Wei-Ying Ma, Ya-Qin Zhang, Yanyan Lan. "Reframing Structure-Based Drug Design Model Evaluation via Metrics Correlated to Practical Needs." International Conference on Learning Representations (ICLR), 2025. https://openreview.net/pdf?id=RyWypcIMiE
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.